Stem-loop sequence dre-mir-122

AccessionMI0001965
DescriptionDanio rerio miR-122 stem-loop
Gene family MIPF0000095; mir-122
Community annotation

This text is a summary paragraph taken from the Wikipedia entry entitled MiR-122. miRBase and Rfam are facilitating community annotation of microRNA families and entries in Wikipedia. Read more ...

miR-122 is a miRNA that is conserved between vertebrate species. miR-122 is not present in invertebrates, and no close paralogs of miR-122 have been detected. miR-122 expression is specific to the liver, where it has been implicated as a regulator of fatty-acid metabolism in mouse studies. Reduced miR-122 levels are associated with hepatocellular carcinoma. miR-122 also plays an important positive role in the regulation of hepatitis C virus replication.

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Stem-loop
   ucca a     gg       c           -uau a 
5'     g gcugu  aguguga aaugguguuug    c u
       | |||||  ||||||| |||||||||||    |  
3'     c cgaua  ucacacu uuaccgcaaac    g c
   ggca -     aa       a           ugcu u 
Get sequence
Deep sequencing
2558 reads, 251 reads per million, 4 experiments
Confidence
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Genome context
Coordinates (Zv9) Overlapping transcripts
21: 9416742-9416817 [-]
intergenic
Database links

Mature sequence dre-miR-122

Accession MIMAT0001818
Sequence

11 - 

uggagugugacaaugguguuug

 - 32

Get sequence
Deep sequencing2201 reads, 4 experiments
Evidence experimental; cloned [1]

References

1
PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).