Stem-loop dre-mir-124-1

Accession

MI0001966

Description

Danio rerio dre-mir-124-1 precursor miRNA

Literature search

25 open access papers mention dre-mir-124-1
(91 sentences)

Sequence

56725304 reads, 4779.0 reads per million, 235 experiments

ggcucucgcuguaCGUGUUCACAGUGGACCUUGAUuuauuguauuucaauUAAGGCACGCGGUGAAUGCCAacagcacagcc
((((...(((((..((((((((.(((..((((((((...........))))))))..))).))))))))..)))))..))))

Structure

    cuc     aC        A   GA        uauu 
ggcu   gcugu  GUGUUCAC GUG  CCUUGAUu    g
||||   |||||  |||||||| |||  ||||||||    u
ccga   cgaca  CGUAAGUG CGC  GGAAUuaa    a
    -ca     AC        G   AC        cuuu 

Annotation confidence High

Genome context

chr2: 26645317-26645398 [-]

Mature dre-miR-124-1-5p

• Accession: MIMAT0052762
• Description: Danio rerio dre-miR-124-1-5p mature miRNA
• Sequence: 14 - CGUGUUCACAGUGGACCUUGAU - 35
• Evidence: experimental ; cloned [1]

Mature dre-miR-124-1-3p

• Accession: MIMAT0001819
• Description: Danio rerio dre-miR-124-1-3p mature miRNA
• Sequence: 51 - UAAGGCACGCGGUGAAUGCCA - 71
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293