miRBase entry: dre-mir-124-2

Stem-loop dre-mir-124-2


Accession
MI0001967
Description
Danio rerio dre-mir-124-2 precursor miRNA
Gene family
MIPF0000021; mir-124

Literature search
24 open access papers mention dre-mir-124-2
(80 sentences)

Sequence

7204 reads, 504 reads per million, 7 experiments
ccugcuuuucuuCGUGUUCACAGCGGACCUUGAUuuaaauguccauacaauUAAGGCACGCGGUGAAUGCCAAgagagauggc
((...(((((((.((((((((.(((..((((((((.............))))))))..))).)))))))).)))))))..)).

Structure
-  ugc       C        A   GA        uaaau 
 cc   uuuucuu GUGUUCAC GCG  CCUUGAUu     g
 ||   ||||||| |||||||| |||  ||||||||     u
 gg   gagagAA CGUAAGUG CGC  GGAAUuaa     c
c  -ua       C        G   AC        cauac 


Annotation confidence High
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Genome context
chr20: 38905531-38905613 [-]

Database links

Mature dre-miR-124-3p

Accession MIMAT0001819
Description Danio rerio dre-miR-124-3p mature miRNA
Sequence 52 - UAAGGCACGCGGUGAAUGCCAA - 73
Evidence experimental
cloned [1]
Database links
Predicted targets

Mature dre-miR-124-5p

Accession MIMAT0031960
Description Danio rerio dre-miR-124-5p mature miRNA
Sequence 13 - CGUGUUCACAGCGGACCUUGAU - 34
Evidence not_experimental

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293