Stem-loop sequence dre-mir-124-3

Accession

MI0001968 (change log)

Description

Danio rerio miR-124-3 stem-loop

Gene family

MIPF0000021; mir-124

Literature search

23 open access papers mention dre-mir-124-3
(78 sentences)

Stem-loop

      u    gg   ---uuc  a     g    cc        a   ga        -   u 
5' ggc cugu  gau      ag cucug cuuu  guguucac gcg  ccuugauu uaa g
   ||| ||||  |||      || ||||| ||||  |||||||| |||  |||||||| |||  
3' ccg gacg  cua      uc gaggc gaga  cguaagug cgc  ggaauuaa auu u
      -    -a   caauuu  c     -    ac        g   ac        c   c 

Deep sequencing

8542 reads, 275 reads per million, 8 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr24: 24455632-24455748 [+]
• Overlapping transcripts:

  antisense

  OTTDART00000059869 ; si:ch211-277b21.2-001; intron 1

  ENSDART00000156423 ; si:ch211-277b21.2-001; intron 1

Database links

• EntrezGene:mir124-3
• EntrezGene:mir124-3
• RNAcentral:URS000075E5BB_7955
• miRBase Tracker:MI0001968

Mature sequence dre-miR-124-5p

• Accession: MIMAT0031960
• Sequence: 31 - cguguucacagcggaccuugau - 52
• Deep sequencing: 10884 reads, 5 experiments
• Evidence: not experimental

Mature sequence dre-miR-124-3p

• Accession: MIMAT0001819
• Previous IDs: dre-miR-124
• Sequence: 68 - uaaggcacgcggugaaugccaa - 89
• Deep sequencing: 29486 reads, 8 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS00000ADB79_7955
• Predicted targets:
  • TargetScanFish:dre-miR-124

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).