Stem-loop sequence dre-mir-124-5

Accession

MI0001970 (change log)

Description

Danio rerio miR-124-5 stem-loop

Gene family

MIPF0000021; mir-124

Literature search

23 open access papers mention dre-mir-124-5
(78 sentences)

Stem-loop

   gg  uuu      -  guucuuuuu   -    cg    - c        a   ga        uaaug 
5'   gu   gcucgu gc         gag uucu  cucu g guguucac gcg  ccuugauu     u
     ||   |||||| ||         ||| ||||  |||| | |||||||| |||  ||||||||      
3'   cg   ugagca cg         cuc aaga  gaga c cguaagug cgc  ggaauuaa     c
   cg  -uu      a  -----accu   u    -a    a -        g   ac        cauac 

Deep sequencing

8545 reads, 275 reads per million, 8 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr23: 17783413-17783541 [+]
• Overlapping transcripts:

  antisense

  OTTDART00000059682 ; si:ch211-280c4.5-001; intron 2

  ENSDART00000155348 ; si:ch211-280c4.5-001; intron 2

Database links

• EntrezGene:mir124-5
• EntrezGene:mir124-5
• RNAcentral:URS000075D521_7955
• miRBase Tracker:MI0001970

Mature sequence dre-miR-124-5p

• Accession: MIMAT0031960
• Sequence: 39 - cguguucacagcggaccuugau - 60
• Deep sequencing: 10884 reads, 5 experiments
• Evidence: not experimental

Mature sequence dre-miR-124-3p

• Accession: MIMAT0001819
• Previous IDs: dre-miR-124
• Sequence: 77 - uaaggcacgcggugaaugccaa - 98
• Deep sequencing: 29486 reads, 8 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS00000ADB79_7955
• Predicted targets:
  • TargetScanFish:dre-miR-124

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).