Stem-loop sequence dre-mir-125a-1

AccessionMI0001972 (change log)
DescriptionDanio rerio miR-125a-1 stem-loop
Gene family MIPF0000033; mir-10
Literature search

14 open access papers mention dre-mir-125a-1
(52 sentences)

Stem-loop
         cu      c      ac     a       ---  u 
5' guaugu  cuuugu ccugag  ccuua ccuguga   gg c
   ||||||  |||||| ||||||  ||||| |||||||   || a
3' cguacg  gggaca ggacuc  ggagu ggacacu   uc a
         uc      a      cu     -       gga  a 
Get sequence
Deep sequencing
17422 reads, 1.09e+03 reads per million, 10 experiments
Confidence Annotation confidence: high
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Genome context
Coordinates (GRCz11; GCA_000002035.4) Overlapping transcripts
chr16: 24898171-24898253 [+]
intergenic
Database links

Mature sequence dre-miR-125a

Accession MIMAT0001820
Sequence

14 - 

ucccugagacccuuaaccugug

 - 35

Get sequence
Deep sequencing34768 reads, 10 experiments
Evidence experimental; cloned [1]
Database links
Predicted targets

References

1
PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).