Stem-loop sequence dre-mir-125a-2

Accession

MI0001973 (change log)

Description

Danio rerio miR-125a-2 stem-loop

Gene family

MIPF0000033; mir-10

Literature search

14 open access papers mention dre-mir-125a-2
(52 sentences)

Stem-loop

   gauca   caa   g       u      c  ug  ac     a        g cu 
5'      guc   auc auguaug cugugu cc  ag  ccuua ccugugau u  u
        |||   ||| ||||||| |||||| ||  ||  ||||| |||||||| |   
3'      cag   uag uauaugu ggcaca gg  uc  ggagu ggacacug a  c
   --cug   ---   -       c      a  gu  cu     -        g ac 

Deep sequencing

17437 reads, 1.09e+03 reads per million, 10 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr19: 9443772-9443878 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:mir125a-2
• EntrezGene:mir125a-2
• RNAcentral:URS000075AF32_7955
• miRBase Tracker:MI0001973

Mature sequence dre-miR-125a

• Accession: MIMAT0001820
• Sequence: 29 - ucccugagacccuuaaccugug - 50
• Deep sequencing: 34768 reads, 10 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS000075E604_7955
• Predicted targets:
  • TargetScanFish:dre-miR-125a

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).