miRBase entry: dre-mir-125a-2

Stem-loop dre-mir-125a-2


Accession
MI0001973
Description
Danio rerio dre-mir-125a-2 precursor miRNA
Gene family
MIPF0000033; mir-10

Literature search
14 open access papers mention dre-mir-125a-2
(54 sentences)

Sequence

12841 reads, 1084 reads per million, 10 experiments
gaucaguccaaaucgauguaugucugugUCCCUGAGACCCUUAACCUGUGaugucuuccaaggucacaggugagguccuugggaacacggcuguauaugaugacguc
.....(((...(((.(((((((.((((((.((((((..(((((.((((((((.(......).)))))))))))))..)))))).)))))).)))))))))))))...

Structure
gauca   caa   g       u      C      AC     A        g cu 
     guc   auc auguaug cugugU CCUGAG  CCUUA CCUGUGau u  u
     |||   ||| ||||||| |||||| ||||||  ||||| |||||||| |   
     cag   uag uauaugu ggcaca ggguuc  ggagu ggacacug a  c
--cug   ---   -       c      a      cu     -        g ac 


Annotation confidence High
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Genome context
chr19: 9443772-9443878 [+]

Database links

Mature dre-miR-125a

Accession MIMAT0001820
Description Danio rerio dre-miR-125a mature miRNA
Sequence 29 - UCCCUGAGACCCUUAACCUGUG - 50
Evidence experimental
cloned [1]
Database links
Predicted targets

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293