Stem-loop sequence dre-mir-125b-2

Accession

MI0001976 (change log)

Description

Danio rerio miR-125b-2 stem-loop

Gene family

MIPF0000033; mir-10

Literature search

25 open access papers mention dre-mir-125b-2
(187 sentences)

Stem-loop

        c   u -c     u    c           -     cu 
5' gugcc cuc c  uuccc gaga ccuaacuugug acguu  g
   ||||| ||| |  ||||| |||| ||||||||||| |||||  c
3' cacgg gag g  gaggg cucu ggguugggcac uguag  u
        a   u uc     -    u           c     cu 

Deep sequencing

21236 reads, 1.32e+03 reads per million, 11 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr5: 29998762-29998847 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from dre-mir-125b-2

• dre-mir-100-2: chr5: 29990147-29990221 [+]
• dre-let-7a-4: chr5: 29990452-29990544 [+]
• dre-mir-125b-2: chr5: 29998762-29998847 [+]

Database links

• EntrezGene:mir125b-2
• EntrezGene:mir125b-2
• RNAcentral:URS000075D832_7955
• miRBase Tracker:MI0001976

Mature sequence dre-miR-125b-5p

• Accession: MIMAT0001821
• Previous IDs: dre-miR-125b
• Sequence: 14 - ucccugagacccuaacuuguga - 35
• Deep sequencing: 62216 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS0000209905_7955
• Predicted targets:
  • TargetScanFish:dre-miR-125b

Mature sequence dre-miR-125b-2-3p

• Accession: MIMAT0031964
• Sequence: 55 - cggguuggguucucgggagcu - 75
• Deep sequencing: 427 reads, 11 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS000077EF1C_7955

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).