Stem-loop sequence dre-mir-125b-3

Accession

MI0001977 (change log)

Description

Danio rerio miR-125b-3 stem-loop

Gene family

MIPF0000033; mir-10

Literature search

24 open access papers mention dre-mir-125b-3
(186 sentences)

Stem-loop

     c    ---g   accg    acuccu  u      u    c c          gc    u 
5' cc gugc    gcc    cugc      cc gguccc gaga c uaacuuguga  uuug g
   || ||||    |||    ||||      || |||||| |||| | ||||||||||  |||| u
3' gg cacg    cgg    gacg      gg ccaggg uucu g auuggacacu  aaau g
     u    aaaa   --ga    ------  u      -    c a          aa    c 

Deep sequencing

21169 reads, 1.32e+03 reads per million, 11 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr10: 38051652-38051766 [-]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:mir125b-3
• EntrezGene:mir125b-3
• RNAcentral:URS000075BC83_7955
• miRBase Tracker:MI0001977

Mature sequence dre-miR-125b-5p

• Accession: MIMAT0001821
• Previous IDs: dre-miR-125b
• Sequence: 31 - ucccugagacccuaacuuguga - 52
• Deep sequencing: 62216 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS0000209905_7955
• Predicted targets:
  • TargetScanFish:dre-miR-125b

Mature sequence dre-miR-125b-3-3p

• Accession: MIMAT0031965
• Sequence: 72 - acagguuaagcucuugggaccu - 93
• Deep sequencing: 417 reads, 11 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS0000770CF8_7955

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).