miRBase entry: dre-mir-126a

Stem-loop dre-mir-126a


Accession
MI0001979
Description
Danio rerio dre-mir-126a precursor miRNA
Gene family
MIPF0000115; mir-126

Literature search
15 open access papers mention dre-mir-126a
(67 sentences)

Sequence

13135 reads, 817 reads per million, 10 experiments
gagccauuuuaacugcuucacagucCAUUAUUACUUUUGGUACGCGcuaggccagacucaaacUCGUACCGUGAGUAAUAAUGCacuguggcaguggguuu
(((((......(((((..((((((.(((((((((((.(((((((.(..((......))....).))))))).))))))))))).))))))))))).)))))

Structure
     auuuua     uu      c           U       C --cu  gc 
gagcc      acugc  cacagu CAUUAUUACUU UGGUACG G    ag  c
|||||      |||||  |||||| ||||||||||| ||||||| |    ||   
uuugg      ugacg  guguca GUAAUAAUGAG GCCAUGC c    uc  a
     -----g     --      C           U       U aaac  ag 


Annotation confidence High
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Genome context
chr8: 11548419-11548519 [-]

Database links

Mature dre-miR-126a-5p

Accession MIMAT0003157
Description Danio rerio dre-miR-126a-5p mature miRNA
Sequence 26 - CAUUAUUACUUUUGGUACGCG - 46
Evidence experimental
array [2]
Database links

Mature dre-miR-126a-3p

Accession MIMAT0001823
Description Danio rerio dre-miR-126a-3p mature miRNA
Sequence 64 - UCGUACCGUGAGUAAUAAUGC - 84
Evidence experimental
cloned [1]
Database links
Predicted targets

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293

  2. PubMed ID: 15919954
    MicroRNA expression in zebrafish embryonic development
    "Wienholds E, Kloosterman WP, Miska E, Alvarez-Saavedra E, Berezikov E, de Bruijn E, Horvitz HR, Kauppinen S, Plasterk RH"
    "Science (2005) 309:310-311