miRBase entry: dre-mir-128-2

Stem-loop dre-mir-128-2


Accession
MI0001981
Description
Danio rerio dre-mir-128-2 precursor miRNA
Gene family
MIPF0000048; mir-128

Literature search
5 open access papers mention dre-mir-128-2
(9 sentences)

Sequence

4718 reads, 246 reads per million, 11 experiments
ucugcucaugggucugucaguaguaggacagggggccguuucuacugucagagaugcugccacucgucUCACAGUGAACCGGUCUCUUUUccugcuauucacuucugcaauaauaugagcaga
((((((((((....((.(((((((((((.(((((((((.(((.(((((..((((((........)))))))))))))).))))))))).)))))))).......)))))....))))))))))

Structure
          gguc  u   -------        c         u   u     ca      cug 
ucugcucaug    ug cag       uaguagga agggggccg uuc acugu  gagaug   c
||||||||||    || |||       |||||||| ||||||||| ||| |||||  ||||||    
agacgaguau    ac guc       aucguccU UUCUCUGGC AAG UGACA  CUcugc   c
          aaua  -   uucacuu        U         C   -     --      uca 


Annotation confidence Not enough data
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Genome context
chr19: 42915419-42915541 [+]

Database links

Mature dre-miR-128-3p

Accession MIMAT0001824
Description Danio rerio dre-miR-128-3p mature miRNA
Sequence 69 - UCACAGUGAACCGGUCUCUUUU - 90
Evidence experimental
cloned [1]

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293