Stem-loop dre-mir-128-2

Accession

MI0001981

Description

Danio rerio dre-mir-128-2 precursor miRNA mir-128

Gene
family

RF00649; mir-128

Literature search

5 open access papers mention dre-mir-128-2
(9 sentences)

Sequence

4717 reads, 235 reads per million, 11 experiments

ucugcucaugggucugucaguaguaggacagggggccguuucuacugucagagaugcugccacucgucUCACAGUGAACCGGUCUCUUUUccugcuauucacuucugcaauaauaugagcaga
((((((((((....((.(((((((((((.(((((((((.(((.(((((..((((((........)))))))))))))).))))))))).)))))))).......)))))....))))))))))

Structure

          gguc  u   -------        c         u   u     ca      cug 
ucugcucaug    ug cag       uaguagga agggggccg uuc acugu  gagaug   c
||||||||||    || |||       |||||||| ||||||||| ||| |||||  ||||||    
agacgaguau    ac guc       aucguccU UUCUCUGGC AAG UGACA  CUcugc   c
          aaua  -   uucacuu        U         C   -     --      uca 

Annotation confidence Not enough data

Genome context

chr19: 42915419-42915541 [+]

Mature dre-miR-128-3p

• Accession: MIMAT0001824
• Description: Danio rerio dre-miR-128-3p mature miRNA
• Sequence: 69 - UCACAGUGAACCGGUCUCUUUU - 90
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293