miRBase entry: dre-mir-129-1

Stem-loop dre-mir-129-1


Accession
MI0001983
Description
Danio rerio dre-mir-129-1 precursor miRNA
Gene family
MIPF0000073; mir-129

Literature search
3 open access papers mention dre-mir-129-1
(12 sentences)

Sequence

390 reads, 59 reads per million, 8 experiments
guccuuuucagguCUUUUUGCGGUCUGGGCUUGCUguuccuugaaccaguagccagGAAGCCCUUACCCCAAAAAGUaucugcagaggac
(((((((.((((((((((((.(((..((((((.(((((.((......)).)).))).))))))..))).))))))).))))).)))))))

Structure
       u     -       C   CU      G   -  c  ug 
guccuuu caggu CUUUUUG GGU  GGGCUU CUg uu cu  a
||||||| ||||| ||||||| |||  |||||| ||| || ||   
caggaga gucua GAAAAAC CCA  CCCGAA gac ga ga  a
       c     U       C   UU      G   c  u  cc 


Annotation confidence High
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Genome context
chr4: 19047466-19047555 [-]

Database links

Mature dre-miR-129-5p

Accession MIMAT0001825
Description Danio rerio dre-miR-129-5p mature miRNA
Sequence 14 - CUUUUUGCGGUCUGGGCUUGCU - 35
Evidence experimental
cloned [1]

Mature dre-miR-129-1-3p

Accession MIMAT0031968
Description Danio rerio dre-miR-129-1-3p mature miRNA
Sequence 57 - GAAGCCCUUACCCCAAAAAGU - 77
Evidence not_experimental
Database links

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293