miRBase entry: dre-mir-132-1

Stem-loop dre-mir-132-1


Accession
MI0001989
Description
Danio rerio dre-mir-132-1 precursor miRNA
Gene family
MIPF0000065; mir-132

Literature search
9 open access papers mention dre-mir-132-1
(150 sentences)

Sequence

113 reads, 12 reads per million, 9 experiments
gucuccauggcgACCGUGGCAUUAGAUUGUUACUguaggaacagaauuuuuggUAACAGUCUACAGCCAUGGUCGcuagugggca
((((.(.(((((((((((((..(((((((((((((.((((......)))))))))))))))))..)))))))))))))).)))).

Structure
-    c a             AU             u    ac 
 gucu c uggcgACCGUGGC  UAGAUUGUUACUg agga  a
 |||| | |||||||||||||  ||||||||||||| ||||   
 cggg g aucGCUGGUACCG  AUCUGACAAUggu uuuu  g
a    u -             AC             -    aa 


Annotation confidence High
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Genome context
chr15: 25897715-25897799 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from dre-mir-132-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-132-5p

Accession MIMAT0003403
Description Danio rerio dre-miR-132-5p mature miRNA
Sequence 13 - ACCGUGGCAUUAGAUUGUUACU - 34
Evidence experimental
cloned [1]

Mature dre-miR-132-3p

Accession MIMAT0001829
Description Danio rerio dre-miR-132-3p mature miRNA
Sequence 54 - UAACAGUCUACAGCCAUGGUCG - 75
Evidence experimental
cloned [1]

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293