Stem-loop sequence dre-mir-133a-2

Accession

MI0001992 (change log)

Description

Danio rerio miR-133a-2 stem-loop

Gene family

MIPF0000029; mir-133

Literature search

28 open access papers mention dre-mir-133a-2
(121 sentences)

Stem-loop

        uuu    a       aa  u  a        aacug 
5' aaugc   gcua agcuggu  aa gg accaaauc     u
   |||||   |||| |||||||  || || ||||||||      
3' uuacg   cgau ucgacca  uu cc ugguuuag     u
        ugu    g       ac  c  c        guauu 

Deep sequencing

21380 reads, 500 reads per million, 11 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr23: 7172120-7172203 [-]
• Overlapping transcripts:

  sense

  OTTDART00000059680 ; si:dkey-53i3.1-001; exon 3

  ENSDART00000156369 ; si:dkey-53i3.1-001; exon 3

Database links

• EntrezGene:mir133a-2
• EntrezGene:mir133a-2
• RNAcentral:URS000075ED1C_7955
• miRBase Tracker:MI0001992

Mature sequence dre-miR-133a-2-5p

• Accession: MIMAT0031970
• Sequence: 14 - agcugguaaaauggaaccaaa - 34
• Deep sequencing: 7166 reads, 5 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS000077EBD3_7955

Mature sequence dre-miR-133a-3p

• Accession: MIMAT0001830
• Previous IDs: dre-miR-133a
• Sequence: 51 - uuugguccccuucaaccagcug - 72
• Deep sequencing: 28428 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS00004C9052_7955
• Predicted targets:
  • TargetScanFish:dre-miR-133a

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).