Stem-loop sequence dre-mir-133a-2

AccessionMI0001992
DescriptionDanio rerio miR-133a-2 stem-loop
Gene family MIPF0000029; mir-133
Community annotation

This text is a summary paragraph taken from the Wikipedia entry entitled mir-133_microRNA_precursor_family. miRBase and Rfam are facilitating community annotation of microRNA families and entries in Wikipedia. Read more ...

mir-133 is a type of non-coding RNA called a microRNA that was first experimentally characterised in mice. Homologues have since been discovered in several other species including invertebrates such as the fruitfly Drosophila melanogaster. Each species often encodes multiple microRNAs with identical or similar mature sequence. For example, in the human genome there are three known miR-133 genes: miR-133a-1, miR-133a-2 and miR-133b found on chromosomes 18, 20 and 6 respectively. The mature sequence is excised from the 3' arm of the hairpin. miR-133 is expressed in muscle tissue and appears to repress the expression of non-muscle genes.

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Stem-loop
        uuu    a       aa  u  a        aacug 
5' aaugc   gcua agcuggu  aa gg accaaauc     u
   |||||   |||| |||||||  || || ||||||||      
3' uuacg   cgau ucgacca  uu cc ugguuuag     u
        ugu    g       ac  c  c        guauu 
Get sequence
Deep sequencing
5496 reads, 458 reads per million, 4 experiments
Confidence Annotation confidence: high
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (Zv9) Overlapping transcripts
23: 7175214-7175297 [+]
sense
OTTDART00000059680 ; si:dkey-53i3.1-001; exon 3
ENSDART00000156369 ; si:dkey-53i3.1-001; exon 3
Database links

Mature sequence dre-miR-133a-2-5p

Accession MIMAT0031970
Sequence

14 - 

agcugguaaaauggaaccaaa

 - 34

Get sequence
Deep sequencing1087 reads, 4 experiments
Evidence not experimental

Mature sequence dre-miR-133a-3p

Accession MIMAT0001830
Previous IDsdre-miR-133a
Sequence

51 - 

uuugguccccuucaaccagcug

 - 72

Get sequence
Deep sequencing7687 reads, 4 experiments
Evidence experimental; cloned [1]
Validated targets

References

1
PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).