miRBase entry: dre-mir-133c

Stem-loop dre-mir-133c


Accession
MI0001995
Description
Danio rerio dre-mir-133c precursor miRNA
Gene family
MIPF0000029; mir-133

Literature search
23 open access papers mention dre-mir-133c
(73 sentences)

Sequence

6326 reads, 555 reads per million, 5 experiments
gaaacacggcuuaguuGCUGGUAAAACGGAACCAAGUCggguguuugcgagaggUUUGGUCCCUUUCAACCAGCUAcugcgccgugaauuc
....((((((.((((.((((((..((.((.(((((((((.(....).)))....)))))).)).))..)))))).)))).)))))).....

Structure
-gaaa      u    u      AA  C  A      ----   g u 
     cacggc uagu GCUGGU  AA GG ACCAAG    UCg g g
     |||||| |||| ||||||  || || ||||||    ||| |  
     gugccg gucA CGACCA  UU CC UGGUUU    agc u u
cuuaa      c    U      AC  U  C      ggag   g u 


Annotation confidence High
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Genome context
chr17: 5962975-5963065 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from dre-mir-133c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-133c-3p

Accession MIMAT0001832
Description Danio rerio dre-miR-133c-3p mature miRNA
Sequence 55 - UUUGGUCCCUUUCAACCAGCUA - 76
Evidence experimental
cloned [1]
Database links
Predicted targets

Mature dre-miR-133c-5p

Accession MIMAT0031971
Description Danio rerio dre-miR-133c-5p mature miRNA
Sequence 17 - GCUGGUAAAACGGAACCAAGUC - 38
Evidence not_experimental
Database links

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293