Stem-loop sequence dre-mir-137-1

Accession

MI0002000 (change log)

Description

Danio rerio miR-137-1 stem-loop

Gene family

MIPF0000106; mir-137

Literature search

6 open access papers mention dre-mir-137-1
(108 sentences)

Stem-loop

               ug   g           ug a     -  g 
5' ggcucucuucgg  acg guauucuuggg  g uaaua cg c
   ||||||||||||  ||| |||||||||||  | ||||| || u
3' cugagaggaguu  ugc cauaagaauuc  u auugu gc c
               ga   g           gu -     u  u 

Deep sequencing

3725 reads, 100 reads per million, 9 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr2: 20145741-20145825 [-]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:mir137-1
• EntrezGene:mir137-1
• RNAcentral:URS000075A040_7955
• miRBase Tracker:MI0002000

Mature sequence dre-miR-137-5p

• Accession: MIMAT0031972
• Sequence: 15 - acggguauucuuggguggauaaua - 38
• Deep sequencing: 1252 reads, 4 experiments
• Evidence: not experimental

Mature sequence dre-miR-137-3p

• Accession: MIMAT0001834
• Previous IDs: dre-miR-137
• Sequence: 51 - uuauugcuuaagaauacgcgua - 72
• Deep sequencing: 6196 reads, 9 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS0000759BA9_7955
• Predicted targets:
  • TargetScanFish:dre-miR-137

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).