miRBase entry: dre-mir-141

Stem-loop dre-mir-141


Accession
MI0002004
Description
Danio rerio dre-mir-141 precursor miRNA
Gene family
MIPF0000019; mir-8

Literature search
6 open access papers mention dre-mir-141
(65 sentences)

Sequence

26124 reads, 1862 reads per million, 11 experiments
gucucuaggguaCAUCUUACCUGACAGUGCUUGGcuguucacugauguucUAACACUGUCUGGUAACGAUGCacucuggugac
(((.(((((((.(((((((((.(((((((.((((....((...))....))))))))))).))))).)))).))))))).)))

Structure
   u       a    -     U       C    cugu  a 
guc cuagggu CAUC UUACC GACAGUG UUGG    uc  
||| ||||||| |||| ||||| ||||||| ||||    || c
cag ggucuca GUAG AAUGG CUGUCAC AAUc    ag  
   u       C    C     U       -    uugu  u 


Annotation confidence High
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Genome context
chr6: 40656003-40656085 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from dre-mir-141
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-141-3p

Accession MIMAT0001837
Description Danio rerio dre-miR-141-3p mature miRNA
Sequence 51 - UAACACUGUCUGGUAACGAUGC - 72
Evidence experimental
cloned [1]
Database links
Predicted targets

Mature dre-miR-141-5p

Accession MIMAT0031974
Description Danio rerio dre-miR-141-5p mature miRNA
Sequence 13 - CAUCUUACCUGACAGUGCUUGG - 34
Evidence not_experimental
Database links

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293