Stem-loop sequence dre-mir-142b

AccessionMI0002006 (change log)
DescriptionDanio rerio miR-142b stem-loop
Gene family MIPF0000084; mir-142
Literature search

7 open access papers mention dre-mir-142b
(40 sentences)

Stem-loop
           g   cu          ac        uaaacuuc 
5' acagugca uca  cauaaaguag  agcacuac        u
   |||||||| |||  ||||||||||  ||||||||         
3' ugucaugu agu  guauuucauc  uugugaug        c
           g   ag          cu        ugacacau 
Get sequence
Deep sequencing
6760 reads, 8.37e+04 reads per million, 12 experiments
Confidence Annotation confidence: high
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Genome context
Coordinates (GRCz11; GCA_000002035.4) Overlapping transcripts
chr15: 15383898-15383983 [-]
sense
OTTDART00000057104 ; mir142b-001; exon 1
ENSDART00000156757 ; mir142b-001; exon 1
Database links

Mature sequence dre-miR-142b-5p

Accession MIMAT0001839
Sequence

15 - 

cauaaaguagacagcacuacua

 - 36

Get sequence
Deep sequencing5630 reads, 8 experiments
Evidence experimental; cloned [1]
Database links
Predicted targets

References

1
PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).