Stem-loop sequence dre-mir-142b

Accession

MI0002006 (change log)

Description

Danio rerio miR-142b stem-loop

Gene family

MIPF0000084; mir-142

Stem-loop

           g   cu          ac        uaaacuuc 
5' acagugca uca  cauaaaguag  agcacuac        u
   |||||||| |||  ||||||||||  ||||||||         
3' ugucaugu agu  guauuucauc  uugugaug        c
           g   ag          cu        ugacacau 

Confidence

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Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr15: 15383898-15383983 [-]
• Overlapping transcripts:

  sense

  OTTDART00000057104 ; mir142b-001; exon 1

  ENSDART00000156757 ; mir142b-001; exon 1

Database links

• EntrezGene:mir142b
• EntrezGene:mir142b
• RNAcentral:URS000075E720_7955
• miRBase Tracker:MI0002006

Mature sequence dre-miR-142b-5p

• Accession: MIMAT0001839
• Sequence: 15 - cauaaaguagacagcacuacua - 36
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS000075C158_7955
• Predicted targets:
  • TargetScanFish:dre-miR-142b-5p

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).