Stem-loop sequence dre-mir-142b

Accession

MI0002006 (change log)

Description

Danio rerio miR-142b stem-loop

Gene family

MIPF0000084; mir-142

Literature search

7 open access papers mention dre-mir-142b
(40 sentences)

Stem-loop

           g   cu          ac        uaaacuuc 
5' acagugca uca  cauaaaguag  agcacuac        u
   |||||||| |||  ||||||||||  ||||||||         
3' ugucaugu agu  guauuucauc  uugugaug        c
           g   ag          cu        ugacacau 

Deep sequencing

6760 reads, 8.37e+04 reads per million, 12 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr15: 15383898-15383983 [-]
• Overlapping transcripts:

  sense

  OTTDART00000057104 ; mir142b-001; exon 1

  ENSDART00000156757 ; mir142b-001; exon 1

Database links

• EntrezGene:mir142b
• EntrezGene:mir142b
• RNAcentral:URS000075E720_7955
• miRBase Tracker:MI0002006

Mature sequence dre-miR-142b-5p

• Accession: MIMAT0001839
• Sequence: 15 - cauaaaguagacagcacuacua - 36
• Deep sequencing: 5630 reads, 8 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS000075C158_7955
• Predicted targets:
  • TargetScanFish:dre-miR-142b-5p

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).