Stem-loop sequence dre-mir-145

AccessionMI0002010
Previous IDsdre-mir-145-1
DescriptionDanio rerio miR-145 stem-loop
Gene family MIPF0000079; mir-145
Community annotation

This text is a summary paragraph taken from the Wikipedia entry entitled Mir-145. miRBase and Rfam are facilitating community annotation of microRNA families and entries in Wikipedia. Read more ...

In molecular biology mir-145 microRNA is a short RNA molecule. MicroRNAs function to regulate the expression levels of other genes by a several mechanisms.

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Stem-loop
        cu  aucauu      u        uc    u  c             ggg a 
5' ucagu  uc      uccuca ccccgggg  cagu uu ccaggaaucccuu   c a
   |||||  ||      |||||| ||||||||  |||| || |||||||||||||   |  
3' aguca  ag      gggggu gggguucu  guca aa gguccuuaggggg   g u
        uc  ----gu      u        -u    u  a             aaa c 
Get sequence
Deep sequencing
2904 reads, 1.49e+03 reads per million, 4 experiments
Confidence Annotation confidence: high
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Genome context
Coordinates (Zv9) Overlapping transcripts
14: 40133370-40133482 [+]
intergenic
Clustered miRNAs
< 10kb from dre-mir-145
dre-mir-143-114: 40131661-40131759 [+]
dre-mir-14514: 40133370-40133482 [+]
Database links

Mature sequence dre-miR-145-5p

Accession MIMAT0001842
Previous IDsdre-miR-145
Sequence

30 - 

guccaguuuucccaggaauccc

 - 51

Get sequence
Deep sequencing1738 reads, 4 experiments
Evidence experimental; cloned [1]
Validated targets

Mature sequence dre-miR-145-3p

Accession MIMAT0031976
Sequence

69 - 

ggauuccuggaaauacuguucu

 - 90

Get sequence
Deep sequencing832 reads, 4 experiments
Evidence not experimental

References

1
PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).