Stem-loop sequence dre-mir-146b

AccessionMI0002013
Previous IDsdre-mir-146b-1
DescriptionDanio rerio miR-146b stem-loop
Gene family MIPF0000103; mir-146
Community annotation

This text is a summary paragraph taken from the Wikipedia entry entitled miR-146. miRBase and Rfam are facilitating community annotation of microRNA families and entries in Wikipedia. Read more ...

miR-146 is a family of microRNA precursors found in mammals, including humans. The ~22 nucleotide mature miRNA sequence is excised from the precursor hairpin by the enzyme Dicer. This sequence then associates with RISC which effects RNA interference. miR-146 is primarily involved in the regulation of inflammation and other process that function in the innate immune system. Loss of functional miR-146 (and mir-145) could predispose an individual to suffer from chromosome 5q deletion syndrome. miR-146 has also been reported to be highly upregulated in osteoarthritis cartilage, and could be involved in its pathogenesis.

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Stem-loop
     -   ug    u              aa    gucugcu 
5' gc ucu  gcuu gagaacugaauucc  gggu       u
   || |||  |||| ||||||||||||||  ||||        
3' cg agg  ugaa uucuugacuugagg  cccg       u
     u   uu    -              ca    acuuaua 
Get sequence
Deep sequencing
1156 reads, 352 reads per million, 4 experiments
Confidence
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Genome context
Coordinates (Zv9) Overlapping transcripts
21: 40390759-40390838 [-]
intergenic
Database links

Mature sequence dre-miR-146b

Accession MIMAT0001844
Sequence

12 - 

ugagaacugaauuccaagggug

 - 33

Get sequence
Deep sequencing914 reads, 4 experiments
Evidence experimental; cloned [1]

References

1
PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).