Stem-loop sequence dre-mir-153c

Accession

MI0002022 (change log)

Description

Danio rerio miR-153c stem-loop

Gene family

MIPF0000050; mir-153

Stem-loop

          -   -a       -----    gac   -g       c      -              -       a uagu 
5' gauggag auc  guagguc     ccug   gua  cacaccu ccagug ucauuuuugugauu ugcagcu g    c
   ||||||| |||  |||||||     ||||   |||  ||||||| |||||| |||||||||||||| ||||||| |     
3' cuaccuc uag  cauucgg     ggac   cgu  gugugga gguuac aguaaaaacacuga acguuga c    u
          c   gc       aguga    -ga   ga       u      u              u       c uggg 

Confidence

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr9: 7612376-7612526 [+]
• Overlapping transcripts:

  sense

  OTTDART00000045866 ; ptprna-002; intron 3

  OTTDART00000045865 ; ptprna-001; intron 19

  ENSDART00000143847 ; ptprna-002; intron 3

  ENSDART00000081543 ; ptprna-001; intron 19

Database links

• EntrezGene:mir153c
• EntrezGene:mir153c
• RNAcentral:URS000075A6EA_7955
• miRBase Tracker:MI0002022

Mature sequence dre-miR-153c-5p

• Accession: MIMAT0031979
• Sequence: 43 - gucauuuuugugauuugcagcu - 64
• Evidence: not experimental
• Database links:
  • RNAcentral:URS000075ED9F_7955

Mature sequence dre-miR-153c-3p

• Accession: MIMAT0001850
• Previous IDs: dre-miR-153c
• Sequence: 81 - uugcauagucacaaaaaugauc - 102
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS000075E3CD_7955
• Predicted targets:
  • TargetScanFish:dre-miR-153c

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).