Stem-loop dre-mir-153c

Accession

MI0002022

Description

Danio rerio dre-mir-153c precursor miRNA

Gene family

MIPF0000050; mir-153

Literature search

4 open access papers mention dre-mir-153c
(137 sentences)

Sequence

2172 reads, 254 reads per million, 10 experiments

gauggagaucaguaggucccuggacguagcacaccucccaguGUCAUUUUUGUGAUUUGCAGCUaguagucuggguccagUUGCAUAGUCACAAAAAUGAUCauugguaggugugagugcagcaggagugaggcuuaccggauccuccauc
((((((((((.(((((((((((...(((.(((((((.(((((((((((((((((((((((((((.(..........).))))))).)))))))))))))).)))))).)))))))..)))..)))).....)))))))..))).)))))))

Structure

       -   -a       -----    gac   -g       c      -              -       a uagu 
gauggag auc  guagguc     ccug   gua  cacaccu ccaguG UCAUUUUUGUGAUU UGCAGCU g    c
||||||| |||  |||||||     ||||   |||  ||||||| |||||| |||||||||||||| ||||||| |     
cuaccuc uag  cauucgg     ggac   cgu  gugugga gguuaC AGUAAAAACACUGA ACGUUga c    u
       c   gc       aguga    -ga   ga       u      U              U       c uggg 

Annotation confidence High

Genome context

chr9: 7612376-7612526 [+]

Mature dre-miR-153c-3p

• Accession: MIMAT0001850
• Description: Danio rerio dre-miR-153c-3p mature miRNA
• Sequence: 81 - UUGCAUAGUCACAAAAAUGAUC - 102
• Evidence: experimental ; cloned [1]

Mature dre-miR-153c-5p

• Accession: MIMAT0031979
• Description: Danio rerio dre-miR-153c-5p mature miRNA
• Sequence: 43 - GUCAUUUUUGUGAUUUGCAGCU - 64
• Evidence: not_experimental

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293