Stem-loop sequence dre-mir-184-1

Accession

MI0002026 (change log)

Previous IDs

dre-mir-184

Description

Danio rerio miR-184 stem-loop

Gene family

MIPF0000059; mir-184

Literature search

5 open access papers mention dre-mir-184-1
(106 sentences)

Stem-loop

       aa     c         c      a c     uauccau 
5' gucg  cacgu uccuuauca uuuucc g ccagc       u
   ||||  ||||| ||||||||| |||||| | |||||        
3' uagc  gugua gggaauagu aagagg c gguug       u
       cc     c         c      - a     cuuauga 

Deep sequencing

364328 reads, 2.21e+04 reads per million, 11 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr18: 26203303-26203389 [-]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:mir184
• EntrezGene:mir184
• RNAcentral:URS000075CB28_7955
• miRBase Tracker:MI0002026

Mature sequence dre-miR-184

• Accession: MIMAT0001853
• Sequence: 55 - uggacggagaacugauaagggc - 76
• Deep sequencing: 728181 reads, 11 experiments
• Evidence: by similarity; MI0002026
• Database links:
  • RNAcentral:URS00005DFDA7_7955
• Predicted targets:
  • TargetScanFish:dre-miR-184

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).