Stem-loop dre-mir-193a-2

Accession

MI0002030

Description

Danio rerio dre-mir-193a-2 precursor miRNA

Gene family

MIPF0000082; mir-193

Literature search

3 open access papers mention dre-mir-193a-2
(7 sentences)

Sequence

141 reads, 22 reads per million, 11 experiments

gagagugugucagaggcUGGGUCUUUGCGGGCAAGGUGAguuuuccuuucauucAACUGGCCUACAAAGUCCCAGUuuucggcccaugugaccaucuc
(((((((.(((.(((((((((.(((((.((((.((.(((((.........))))).)).)))).))))).))))))))).))).))).......))))

Structure

    -------   u   a         U     C    A  G     uuu 
gaga       gug guc gaggcUGGG CUUUG GGGC AG UGAgu   c
||||       ||| ||| ||||||||| ||||| |||| || |||||   c
cucu       uac cgg uuuUGACCC GAAAC UCCG UC Acuua   u
    accagug   c   c         U     A    G  A     cuu 

Annotation confidence High

Genome context

chr6: 18517970-18518067 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-193a-2

Mature dre-miR-193a-3p

• Accession: MIMAT0001856
• Description: Danio rerio dre-miR-193a-3p mature miRNA
• Sequence: 55 - AACUGGCCUACAAAGUCCCAGU - 76
• Evidence: experimental ; cloned [1]

Mature dre-miR-193a-5p

• Accession: MIMAT0031981
• Description: Danio rerio dre-miR-193a-5p mature miRNA
• Sequence: 18 - UGGGUCUUUGCGGGCAAGGUGA - 39
• Evidence: not_experimental

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293