Stem-loop sequence dre-mir-194a

Accession

MI0002033 (change log)

Description

Danio rerio miR-194a stem-loop

Gene family

MIPF0000055; mir-194

Literature search

7 open access papers mention dre-mir-194a
(24 sentences)

Stem-loop

   u    -   a    u          a      g       uu 
5'  ggug cug cugc uguaacagca cuccau uggaagg  u
    |||| ||| |||| |||||||||| |||||| |||||||   
3'  ccac gau gacg gcguugucgu gaggug accuucu  g
   a    u   a    u          c      -       gu 

Deep sequencing

3322 reads, 136 reads per million, 11 experiments

Confidence

Annotation confidence: not enough data

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Genome context

Coordinates (GRCz11; GCA_000002035.4)	Overlapping transcripts
chr10: 27063174-27063257 [+]	intergenic
KZ114914.1: 88587-88670 [+]	intergenic
KZ115324.1: 286303-286386 [+]	intergenic

Clustered miRNAs

< 10kb from dre-mir-194a

• dre-mir-194a: chr10: 27063174-27063257 [+]
• dre-mir-192: chr10: 27063354-27063438 [+]

Database links

• EntrezGene:mir194a
• EntrezGene:mir194a
• RNAcentral:URS000075ACB8_7955
• miRBase Tracker:MI0002033

Mature sequence dre-miR-194a

• Accession: MIMAT0001858
• Sequence: 15 - uguaacagcaacuccaugugg - 35
• Deep sequencing: 3297 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS000075D2A3_7955
• Predicted targets:
  • TargetScanFish:dre-miR-194a

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).