Stem-loop sequence dre-mir-194b

AccessionMI0002034
DescriptionDanio rerio miR-194b stem-loop
Gene family MIPF0000055; mir-194
Community annotation

This text is a summary paragraph taken from the Wikipedia entry entitled mir-194_microRNA_precursor_family. miRBase and Rfam are facilitating community annotation of microRNA families and entries in Wikipedia. Read more ...

In molecular biology, miR-194 microRNA precursor is a small non-coding RNA gene that regulated gene expression. Its expression has been verified in mouse (MI0000236, MI0000733) and in human (MI0000488, MI0000732). mir-194 appears to be a vertebrate-specific miRNA and has now been predicted or experimentally confirmed in a range of vertebrate species (MIPF0000055). The mature microRNA is processed from the longer hairpin precursor by the Dicer enzyme. In this case, the mature sequence is excised from the 5' arm of the hairpin.

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Stem-loop
       g   g u        cg       u  aaa  gca 
5' gcuc cug g guaacagc  cuccaug gg   au   u
   |||| ||| | ||||||||  ||||||| ||   ||    
3' ugag gac u cauugucg  gagguac cc   ug   u
       a   g c        aa       -  --g  aac 
Get sequence
Deep sequencing
181 reads, 65.6 reads per million, 4 experiments
Confidence Annotation confidence: high
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Genome context
Coordinates (Zv9) Overlapping transcripts
14: 48410784-48410860 [-]
intergenic
Database links

Mature sequence dre-miR-194b

Accession MIMAT0001859
Sequence

11 - 

uguaacagccgcuccaugugga

 - 32

Get sequence
Deep sequencing130 reads, 4 experiments
Evidence experimental; cloned [1]

References

1
PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).