Stem-loop sequence dre-mir-196b

Accession

MI0002036 (change log)

Description

Danio rerio miR-196b stem-loop

Gene family

MIPF0000031; mir-196

Literature search

10 open access papers mention dre-mir-196b
(31 sentences)

Stem-loop

   gucu ug               a   g   ggc    cgu 
5'     g  auuuagguaguuuca guu uug   ugga   u
       |  ||||||||||||||| ||| |||   ||||    
3'     c  uaaguccgucaaagu caa gac   acuu   u
   accu gu               c   g   ---    uaa 

Deep sequencing

14453 reads, 636 reads per million, 11 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr3: 23673377-23673455 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:mir196b
• EntrezGene:mir196b
• RNAcentral:URS000075E9DD_7955
• miRBase Tracker:MI0002036

Mature sequence dre-miR-196b

• Accession: MIMAT0001860
• Sequence: 11 - uagguaguuucaaguuguuggg - 32
• Deep sequencing: 14319 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS00000B5C59_7955
• Predicted targets:
  • TargetScanFish:dre-miR-196b

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).