Stem-loop sequence dre-mir-200a

Accession

MI0002037 (change log)

Description

Danio rerio miR-200a stem-loop

Gene family

MIPF0000019; mir-8

Literature search

19 open access papers mention dre-mir-200a
(227 sentences)

Stem-loop

     -          c    -             c    cuguau 
5' gg cacuuagcag cauc uuaccggacagug ugga      a
   || |||||||||| |||| ||||||||||||| ||||       
3' cc guggguuguu guag aauggucugucac aucu      a
     a          u    c             a    uuuguc 

Deep sequencing

74588 reads, 3.93e+03 reads per million, 11 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr23: 24072160-24072245 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from dre-mir-200a

• dre-mir-200b: chr23: 24072029-24072110 [+]
• dre-mir-200a: chr23: 24072160-24072245 [+]
• dre-mir-429a: chr23: 24073815-24073896 [+]
• dre-mir-7149: chr23: 24074083-24074155 [+]

Database links

• EntrezGene:mir200a
• EntrezGene:mir200a
• RNAcentral:URS000075E51A_7955
• miRBase Tracker:MI0002037

Mature sequence dre-miR-200a-5p

• Accession: MIMAT0031984
• Sequence: 14 - caucuuaccggacagugcugga - 35
• Deep sequencing: 1586 reads, 11 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS000023B77E_7955

Mature sequence dre-miR-200a-3p

• Accession: MIMAT0001861
• Previous IDs: dre-miR-200a
• Sequence: 52 - uaacacugucugguaacgaugu - 73
• Deep sequencing: 73002 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS000008DA94_7955
• Predicted targets:
  • TargetScanFish:dre-miR-200a

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).