miRBase entry: dre-mir-200a

Stem-loop dre-mir-200a


Accession
MI0002037
Description
Danio rerio dre-mir-200a precursor miRNA
Gene family
MIPF0000019; mir-8

Literature search
19 open access papers mention dre-mir-200a
(237 sentences)

Sequence

50315 reads, 2693 reads per million, 11 experiments
ggcacuuagcagcCAUCUUACCGGACAGUGCUGGAcuguauaacuguuuucUAACACUGUCUGGUAACGAUGUuuguugggugacc
((((((((((((.(((((((((((((((((.((((..............)))).))))))))))))).)))).)))))))))).))

Structure
  -          c    -             C    cuguau 
gg cacuuagcag CAUC UUACCGGACAGUG UGGA      a
|| |||||||||| |||| ||||||||||||| ||||       
cc guggguuguu GUAG AAUGGUCUGUCAC AUcu      a
  a          U    C             A    uuuguc 


Annotation confidence High
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Genome context
chr23: 24072160-24072245 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from dre-mir-200a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-200a-3p

Accession MIMAT0001861
Description Danio rerio dre-miR-200a-3p mature miRNA
Sequence 52 - UAACACUGUCUGGUAACGAUGU - 73
Evidence experimental
cloned [1]
Database links
Predicted targets

Mature dre-miR-200a-5p

Accession MIMAT0031984
Description Danio rerio dre-miR-200a-5p mature miRNA
Sequence 14 - CAUCUUACCGGACAGUGCUGGA - 35
Evidence not_experimental
Database links

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293