Stem-loop dre-mir-202

Accession

MI0002040

Description

Danio rerio dre-mir-202 precursor miRNA mir-202

Gene
family

RF00705; mir-202

Literature search

4 open access papers mention dre-mir-202
(117 sentences)

Sequence

53 reads, 11 reads per million, 6 experiments

cuguuccuuuUUCCUAUGCAUAUACCUCUUUGacaugcugcuuuaaAGAGGCAUAGGGCAUGGGAAAAuggggcgg
(((((((.(((((((((((.(((.(((((((((.........))))))))).)))..))))))))))).)))))))

Structure

       u           -A   A         cau 
cuguucc uuUUCCUAUGC  UAU CCUCUUUGa   g
||||||| |||||||||||  ||| |||||||||   c
ggcgggg AAAAGGGUACG  AUA GGAGAaauu   u
       u           GG   C         ucg 

Annotation confidence Medium

Genome context

chr13: 50602639-50602714 [+]

Mature dre-miR-202-5p

• Accession: MIMAT0003406
• Description: Danio rerio dre-miR-202-5p mature miRNA
• Sequence: 11 - UUCCUAUGCAUAUACCUCUUUG - 32
• Evidence: experimental ; cloned [1]

Mature dre-miR-202-3p

• Accession: MIMAT0001864
• Description: Danio rerio dre-miR-202-3p mature miRNA
• Sequence: 47 - AGAGGCAUAGGGCAUGGGAAAA - 68
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293