Stem-loop dre-mir-203b

Accession

MI0002041

Description

Danio rerio dre-mir-203b precursor miRNA

Gene family

MIPF0000108; mir-203

Literature search

5 open access papers mention dre-mir-203b
(9 sentences)

Sequence

185182 reads, 11673 reads per million, 11 experiments

uccucuuuggccgAGUGGUUCUCAACAGUUCAACAguucuuuugaugauuGUGAAAUGUUCAGGACCACUUGaucagacgaagga
((((((((((.(((((((((((.((((.((((.(((((........))))))))).)))).))))))))))).))))).).))))

Structure

    - -     c           C    G    A     cuu 
uccu c uuugg cgAGUGGUUCU AACA UUCA CAguu   u
|||| | ||||| ||||||||||| |||| |||| |||||    
agga g agacu GUUCACCAGGA UUGU AAGU Guuag   u
    a c     a           C    A    -     uag 

Annotation confidence High

Genome context

chr20: 27405878-27405962 [+]

Mature dre-miR-203b-5p

• Accession: MIMAT0003407
• Description: Danio rerio dre-miR-203b-5p mature miRNA
• Sequence: 14 - AGUGGUUCUCAACAGUUCAACA - 35
• Evidence: experimental ; cloned [1]

Mature dre-miR-203b-3p

• Accession: MIMAT0001865
• Description: Danio rerio dre-miR-203b-3p mature miRNA
• Sequence: 51 - GUGAAAUGUUCAGGACCACUUG - 72
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293