Stem-loop sequence dre-mir-204-2

Accession

MI0002042

Description

Danio rerio miR-204-2 stem-loop

Gene family

MIPF0000042; mir-204

Stem-loop

         -  c     ac   uuug    cuc   gg           ca     u    g  guu 
5' guguug cu uagug  cag    ugac   cug  uuucccuuugu  uccua gccu ca   c
   |||||| || |||||  |||    ||||   |||  |||||||||||  ||||| |||| ||    
3' cauaac ga aucau  guc    gcug   gac  ggagggaaacg  agggu cgga gu   c
         u  c     --   --ca    -ua   uu           ac     -    -  agu 

Deep sequencing

688 reads, 73.5 reads per million, 4 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Zv9): 7: 30673504-30673627 [-]
• Overlapping transcripts:

  sense

  OTTDART00000037128 ; trpm1a-003; intron 5

  OTTDART00000037126 ; trpm1a-001; intron 6

  ENSDART00000052584 ; trpm1a-201; intron 4

  ENSDART00000147919 ; trpm1a-003; intron 5

  ENSDART00000140938 ; trpm1a-001; intron 6

  ENSDART00000086664 ; trpm1a-202; intron 6

Database links

• MIRBASE-TRACKER:MI0002042
• ENTREZGENE: 100033697;mir204-2
• ENTREZGENE: 100628919;mir204-2
• RNACENTRAL:URS000075BC58/7955

Mature sequence dre-miR-204-5p

• Accession: MIMAT0001279
• Previous IDs: dre-miR-204
• Sequence: 37 - uucccuuugucauccuaugccu - 58
• Deep sequencing: 1408 reads, 4 experiments
• Evidence: experimental; cloned [1]

Mature sequence dre-miR-204-2-3p

• Accession: MIMAT0031987
• Sequence: 74 - gcugggacagcaaagggaggu - 94
• Deep sequencing: 65 reads, 4 experiments
• Evidence: not experimental

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).