miRBase entry: dre-mir-204-2

Stem-loop dre-mir-204-2


Accession
MI0002042
Description
Danio rerio dre-mir-204-2 precursor miRNA
Gene family
MIPF0000042; mir-204

Literature search
4 open access papers mention dre-mir-204-2
(18 sentences)

Sequence

91350 reads, 5666 reads per million, 11 experiments
guguugcucuagugaccaguuugugaccuccuggguUUCCCUUUGUCAUCCUAUGCCUgcaguuccugaugagGCUGGGACAGCAAAGGGAGGUucagaugucgaccuguacuacagucaauac
((((((((.(((((..(((....((((.((.(((((((((((((((..(((((.((((.((........)))))))))))..))))))))))))))))).))))..)))))))).)).))))))

Structure
      -  c     ac   uuug    c  c               CA     U    g  guu 
guguug cu uagug  cag    ugac uc uggguUUCCCUUUGU  UCCUA GCCU ca   c
|||||| || |||||  |||    |||| || |||||||||||||||  ||||| |||| ||    
cauaac ga aucau  guc    gcug ag acuUGGAGGGAAACG  AGGGU CGga gu   c
      u  c     --   --ca    u  -               AC     -    -  agu 


Annotation confidence High
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Genome context
chr7: 29336996-29337119 [-]

Database links

Mature dre-miR-204-5p

Accession MIMAT0001279
Description Danio rerio dre-miR-204-5p mature miRNA
Sequence 37 - UUCCCUUUGUCAUCCUAUGCCU - 58
Evidence experimental
cloned [1]

Mature dre-miR-204-2-3p

Accession MIMAT0031987
Description Danio rerio dre-miR-204-2-3p mature miRNA
Sequence 74 - GCUGGGACAGCAAAGGGAGGU - 94
Evidence not_experimental
Database links

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293