Stem-loop sequence dre-mir-204-2

Accession

MI0002042 (change log)

Description

Danio rerio miR-204-2 stem-loop

Gene family

MIPF0000042; mir-204

Literature search

4 open access papers mention dre-mir-204-2
(18 sentences)

Stem-loop

         -  c     ac   uuug    cuc   gg           ca     u    g  guu 
5' guguug cu uagug  cag    ugac   cug  uuucccuuugu  uccua gccu ca   c
   |||||| || |||||  |||    ||||   |||  |||||||||||  ||||| |||| ||    
3' cauaac ga aucau  guc    gcug   gac  ggagggaaacg  agggu cgga gu   c
         u  c     --   --ca    -ua   uu           ac     -    -  agu 

Deep sequencing

142158 reads, 8.47e+03 reads per million, 11 experiments

Confidence

Annotation confidence: high

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Genome context

Coordinates (GRCz11; GCA_000002035.4)	Overlapping transcripts
chr7: 29336996-29337119 [-]	sense OTTDART00000037128 ; trpm1a-003; intron 5 OTTDART00000037126 ; trpm1a-001; intron 6 ENSDART00000052584 ; trpm1a-201; intron 4 ENSDART00000147919 ; trpm1a-003; intron 5 ENSDART00000140938 ; trpm1a-001; intron 6 ENSDART00000086664 ; trpm1a-202; intron 6
KZ114891.1: 43462-43585 [-]	sense OTTDART00000037128 ; trpm1a-003; intron 5 OTTDART00000037126 ; trpm1a-001; intron 6 ENSDART00000052584 ; trpm1a-201; intron 4 ENSDART00000147919 ; trpm1a-003; intron 5 ENSDART00000140938 ; trpm1a-001; intron 6 ENSDART00000086664 ; trpm1a-202; intron 6

Database links

• EntrezGene:mir204-2
• EntrezGene:mir204-2
• RNAcentral:URS000075BC58_7955
• miRBase Tracker:MI0002042

Mature sequence dre-miR-204-5p

• Accession: MIMAT0001279
• Previous IDs: dre-miR-204
• Sequence: 37 - uucccuuugucauccuaugccu - 58
• Deep sequencing: 340914 reads, 11 experiments
• Evidence: experimental; cloned [1]

Mature sequence dre-miR-204-2-3p

• Accession: MIMAT0031987
• Sequence: 74 - gcugggacagcaaagggaggu - 94
• Deep sequencing: 548 reads, 9 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS00007662BE_7955

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).