miRBase entry: dre-mir-218a-1

Stem-loop dre-mir-218a-1


Accession
MI0002051
Description
Danio rerio dre-mir-218a-1 precursor miRNA
Gene family
MIPF0000026; mir-218

Literature search
7 open access papers mention dre-mir-218a-1
(151 sentences)

Sequence

1896 reads, 96 reads per million, 11 experiments
cagcugucucUUGUGCUUGAUCUAACCAUGUGccgccgccuacacaagccucacaugguuccgucaagcaccagggaccgcug
((((.((((((.(((((((((..(((((((((..((...........))..)))))))))..))))))))).)))))).))))

Structure
    u      U         CU         cc  cgcc 
cagc gucucU GUGCUUGAU  AACCAUGUG  gc    u
|||| |||||| |||||||||  |||||||||  ||    a
gucg caggga cacgaacug  uugguacac  cg    c
    c      c         cc         uc  aaca 


Annotation confidence Not enough data
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Genome context
chr14: 24562801-24562883 [-]

Database links

Mature dre-miR-218a

Accession MIMAT0001868
Description Danio rerio dre-miR-218a mature miRNA
Sequence 11 - UUGUGCUUGAUCUAACCAUGUG - 32
Evidence experimental
cloned [1]
Database links
Predicted targets

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293