Stem-loop dre-mir-218a-1

Accession

MI0002051

Description

Danio rerio dre-mir-218a-1 precursor miRNA mir-218

Gene
family

RF00255; mir-218

Literature search

7 open access papers mention dre-mir-218a-1
(145 sentences)

Sequence

933804 reads, 2506.0 reads per million, 273 experiments

cagcugucucUUGUGCUUGAUCUAACCAUGUGccgccgccuacacaagccUCACAUGGUUCCGUCAAGCACCagggaccgcug
((((.((((((.(((((((((..(((((((((..((...........))..)))))))))..))))))))).)))))).))))

Structure

    u      U         CU         cc  cgcc 
cagc gucucU GUGCUUGAU  AACCAUGUG  gc    u
|||| |||||| |||||||||  |||||||||  ||    a
gucg caggga CACGAACUG  UUGGUACAC  cg    c
    c      C         CC         Uc  aaca 

Annotation confidence Medium

Genome context

chr14: 24562801-24562883 [-]

Mature dre-miR-218a-5p

• Accession: MIMAT0001868
• Description: Danio rerio dre-miR-218a-5p mature miRNA
• Sequence: 11 - UUGUGCUUGAUCUAACCAUGUG - 32
• Evidence: experimental ; cloned [1]

Mature dre-miR-218a-1-3p

• Accession: MIMAT0052775
• Description: Danio rerio dre-miR-218a-1-3p mature miRNA
• Sequence: 51 - UCACAUGGUUCCGUCAAGCACC - 72
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293