Stem-loop sequence dre-mir-218b

Accession

MI0002053 (change log)

Description

Danio rerio miR-218b stem-loop

Gene family

MIPF0000026; mir-218

Literature search

6 open access papers mention dre-mir-218b
(83 sentences)

Stem-loop

       a a   uu       auc        --   uuc 
5' cagg c cca  gugcuug   uaaccaug  cag   c
   |||| | |||  |||||||   ||||||||  |||    
3' guuc g ggu  cacgaac   guugguac  guc   c
       a a   uu       cgu        cu   uuu 

Deep sequencing

1844 reads, 54.5 reads per million, 11 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr10: 17695265-17695340 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:mir218b
• EntrezGene:mir218b
• RNAcentral:URS000075EAEA_7955
• miRBase Tracker:MI0002053

Mature sequence dre-miR-218b

• Accession: MIMAT0001869
• Sequence: 11 - uugugcuugaucuaaccaugca - 32
• Deep sequencing: 1844 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS000075D62B_7955
• Predicted targets:
  • TargetScanFish:dre-miR-218b

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).