miRBase entry: dre-mir-219-3

Stem-loop dre-mir-219-3


Accession
MI0002054
Description
Danio rerio dre-mir-219-3 precursor miRNA
Gene family
MIPF0000044; mir-219

Literature search
7 open access papers mention dre-mir-219-3
(23 sentences)

Sequence

5608 reads, 460 reads per million, 6 experiments
cuucucuuuuaaguucaucugucugguuugauacugacggucaggugcUGAUUGUCCAAACGCAAUUCUUgugcuugugugaaacaGGAGUUGUGGAUGGACAUCACGCuccugucugguccucacaucuacaggaugggccaaguaaag
............((((((((....(((.(((......(((.((((.((((((.(((((..((((((((((((...........))))))))))))..))))))))).)).)))).)))....))).)))....)))))))).........

Structure
cuucucuuuuaa        gucu   u   uacuga   u    u  -    U     AA            gcuu 
            guucaucu    ggu uga      cgg cagg gc UGAU GUCCA  CGCAAUUCUUgu    g
            ||||||||    ||| |||      ||| |||| || |||| |||||  ||||||||||||    u
            cggguagg    cua acu      guc gucc CG ACUA CAGGU  GUGUUGAGGaca    g
---gaaaugaac        acau   c   --ccug   u    u  C    -     AG            aagu 


Annotation confidence High
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Genome context
chr19: 18861739-18861888 [-]

Database links

Mature dre-miR-219-5p

Accession MIMAT0001286
Description Danio rerio dre-miR-219-5p mature miRNA
Sequence 49 - UGAUUGUCCAAACGCAAUUCUU - 70
Evidence experimental
cloned [1]
Database links
Predicted targets

Mature dre-miR-219-3p

Accession MIMAT0031989
Description Danio rerio dre-miR-219-3p mature miRNA
Sequence 87 - GGAGUUGUGGAUGGACAUCACGC - 109
Evidence not_experimental
Database links

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293