miRBase entry: dre-mir-301a

Stem-loop dre-mir-301a


Accession
MI0002059
Description
Danio rerio dre-mir-301a precursor miRNA
Gene family
MIPF0000034; mir-130

Literature search
3 open access papers mention dre-mir-301a
(4 sentences)

Sequence

4429 reads, 236 reads per million, 11 experiments
gcuguuaacaggugcucugacuucauugcacuacuguauuggacagcuagCAGUGCAAUAGUAUUGUCAAAGcgucugagagcagc
((((((..((((((((.((((..(((((((((.((((........)).)).)))))))).)....)))).))))))))..))))))

Structure
      aa        c    --uu -        a  -  auu 
gcuguu  caggugcu ugac    c auugcacu cu gu   g
||||||  |||||||| ||||    | |||||||| || ||    
cgacga  gucugcGA ACUG    G UAACGUGA ga cg   g
      ga        A    UUAU A        C  u  aca 


Annotation confidence Not enough data
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Genome context
chr10: 33377001-33377086 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from dre-mir-301a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-301a

Accession MIMAT0001870
Description Danio rerio dre-miR-301a mature miRNA
Sequence 51 - CAGUGCAAUAGUAUUGUCAAAG - 72
Evidence experimental
cloned [1]
Database links
Predicted targets

References

  1. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293