Stem-loop sequence dre-mir-301b

Accession

MI0002061 (change log)

Description

Danio rerio miR-301b stem-loop

Gene family

MIPF0000034; mir-130

Literature search

1 open access papers mention dre-mir-301b
(5 sentences)

Stem-loop

         ugu   uu       ---        a  -  acc 
5' aagguc   ugc  ugacgau   guugcacu cu ga   a
   ||||||   |||  |||||||   |||||||| || ||   u
3' uuucgg   acg  acuguua   uaacguga ga cu   c
         cuu   uu       uga        c  a  aau 

Deep sequencing

3554 reads, 130 reads per million, 10 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr5: 13289353-13289433 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from dre-mir-301b

• dre-mir-130c-2: chr5: 13288828-13288908 [+]
• dre-mir-301b: chr5: 13289353-13289433 [+]
• dre-mir-454b: chr5: 13296307-13296422 [+]
• dre-mir-130b: chr5: 13299331-13299414 [+]

Database links

• EntrezGene:mir301b
• EntrezGene:mir301b
• RNAcentral:URS000075DC33_7955
• miRBase Tracker:MI0002061

Mature sequence dre-miR-301b-5p

• Accession: MIMAT0031990
• Sequence: 11 - gcuuugacgauguugcacuac - 31
• Deep sequencing: 381 reads, 9 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS000077EB51_7955

Mature sequence dre-miR-301b-3p

• Accession: MIMAT0001871
• Previous IDs: dre-miR-301b
• Sequence: 49 - cagugcaauaguauugucauug - 70
• Deep sequencing: 3163 reads, 10 experiments
• Evidence: experimental; cloned [1]
• Predicted targets:
  • TargetScanFish:dre-miR-301b

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).