Stem-loop dre-mir-338-2

Accession

MI0002064

Description

Danio rerio dre-mir-338-2 precursor miRNA mir-338

Gene
family

RF00686; mir-338

Literature search

4 open access papers mention dre-mir-338-2
(14 sentences)

Sequence

6908 reads, 466 reads per million, 11 experiments

guguguguguguguuucuggugccugcugagaacaauauccugaugcugaaugaguguguugaaggaaacUCCAGCAUCAGUGAUUUUGUUGccagaggagcacuuugggcauccuguguauau
(((((...(.((((((..(((((((.(((..(((((.((((((((((((...((((............))))))))))))).))).)))))..))).)).)))))..)))))).)....)))))

Structure

     -ugu u      cu     -  g   ag     u   -         aau    guguu 
gugug    g guguuu  ggugc cu cug  aacaa auc cugaugcug   gagu     g
|||||    | ||||||  ||||| || |||  ||||| ||| |||||||||   ||||      
uauau    c uacggg  ucacg gg gac  UUGUU UAG GACUACGAC   CUca     a
     gugu c      uu     a  a   cG     U   U         ---    aagga 

Annotation confidence Medium

Genome context

chr12: 17727528-17727651 [+]

Mature dre-miR-338

• Accession: MIMAT0001873
• Description: Danio rerio dre-miR-338 mature miRNA
• Sequence: 71 - UCCAGCAUCAGUGAUUUUGUUG - 92
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293