miRBase entry: dre-mir-363

Stem-loop dre-mir-363

Accession

MI0002067

Description

Danio rerio dre-mir-363 precursor miRNA mir-363

Gene
family?

RF01898; mir-363

Literature search

2 open access papers mention dre-mir-363
(6 sentences)

Sequence

6844 reads, 231 reads per million, 11 experiments

uaaaugcaaauauuugucuugcuguuuuCGGGUGGAUGACUCUGCAAUUUUauuagugauggaaaaacuucaauaaaAAUUGCACGGUAUCCAUCUGUAauccgcuggauuccauuaccugcguuug
((((((((..((...((((.((.(.((.((((((((((.((.(((((((((.....(((.(......).)))...))))))))).)))))))))))).)).).)).)))).....))..))))))))

Structure

        aa  --uuu    u  u u  u          A  C         auuag   u ga 
uaaaugca  ua     gucu gc g uu CGGGUGGAUG CU UGCAAUUUU     uga g  a
||||||||  ||     |||| || | || |||||||||| || |||||||||     ||| |   
guuugcgu  au     uagg cg c aA GUCUACCUAU GG ACGUUAAaa     acu c  a
        cc  uaccu    u  c u  U          -  C         --aua   u aa

Annotation confidence High

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Genome context

chr14: 31466671-31466797 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from dre-mir-363

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dre-miR-363-3p

Accession	MIMAT0001874
Description	Danio rerio dre-miR-363-3p mature miRNA
Sequence	78 - AAUUGCACGGUAUCCAUCUGUA - 99
Evidence	experimental cloned [1]
Database links
Predicted targets

Mature dre-miR-363-5p

Accession	MIMAT0031992
Description	Danio rerio dre-miR-363-5p mature miRNA
Sequence	29 - CGGGUGGAUGACUCUGCAAUUUU - 51
Evidence	not_experimental
Database links

References

PubMed ID: 15937218
The developmental miRNA profiles of zebrafish as determined by small RNA cloning
"Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
"Genes Dev (2005) 19:1288-1293