Stem-loop sequence dre-mir-375-1

Accession

MI0002072 (change log)

Description

Danio rerio miR-375-1 stem-loop

Gene family

MIPF0000114; mir-375

Literature search

8 open access papers mention dre-mir-375-1
(80 sentences)

Stem-loop

   u          u    u     ac   c    u  a  ug 
5'  gcacuugcuu acgu gagcc  acg acaa ac ug  g
    |||||||||| |||| |||||  ||| |||| || ||   
3'  cgugaacgaa ugcg cucgg  ugc uguu ug ac  a
   a          u    -     cu   u    u  -  uu 

Deep sequencing

16055 reads, 745 reads per million, 11 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr6: 13800093-13800172 [-]
• Overlapping transcripts:

  antisense

  OTTDART00000054349 ; tmem198b-002; intron 3

  ENSDART00000154793 ; tmem198b-002; intron 3

Database links

• EntrezGene:mirn375-1
• RNAcentral:URS0000759A31_7955
• miRBase Tracker:MI0002072

Mature sequence dre-miR-375

• Accession: MIMAT0001876
• Sequence: 49 - uuuguucguucggcucgcguua - 70
• Deep sequencing: 31929 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS000035563D_7955
• Predicted targets:
  • TargetScanFish:dre-miR-375

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).