Stem-loop sequence dre-mir-375-2

Accession

MI0002073 (change log)

Description

Danio rerio miR-375-2 stem-loop

Gene family

MIPF0000114; mir-375

Literature search

8 open access papers mention dre-mir-375-2
(80 sentences)

Stem-loop

   u   c    c c    u     ac   c    u    --g a 
5'  gua uugu u acgu gagcc  acg acaa gccu   c g
    ||| |||| | |||| |||||  ||| |||| ||||   |  
3'  cgu gacg a ugcg cucgg  ugc uguu uggg   g a
   a   a    c u    -     cu   u    u    aaa u 

Deep sequencing

15999 reads, 745 reads per million, 11 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr9: 11571973-11572055 [-]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:mir375-2
• EntrezGene:mir375-2
• RNAcentral:URS000075CC06_7955
• miRBase Tracker:MI0002073

Mature sequence dre-miR-375

• Accession: MIMAT0001876
• Sequence: 52 - uuuguucguucggcucgcguua - 73
• Deep sequencing: 31929 reads, 11 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS000035563D_7955
• Predicted targets:
  • TargetScanFish:dre-miR-375

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).