miRBase entry: dre-mir-454b

Stem-loop dre-mir-454b

Accession

MI0002076

Description

Danio rerio dre-mir-454b precursor miRNA mir-454

Gene
family?

RF00746; mir-454

Literature search

1 open access papers mention dre-mir-454b
(2 sentences)

Sequence

18529 reads, 851 reads per million, 11 experiments

gauaaaugcaucuugcaggcgagacccuaucaauauugccucugcuuuucucacuguuuauggagUAGUGCAAUAUUGCUUAUAGGGucuugacuuuaaggcuaaucugcaauauc
((((..(((((((((.(((((((((((((((((((((((..(((((((.............))))))).)))))))))...))))))))))).))))))))......)))).))))

Structure

    aa    ------     c   -           ---         cu       ucuca 
gaua  ugca      ucuug agg cgagacccuau   caauauugc  cugcuuu     c
||||  ||||      ||||| ||| |||||||||||   |||||||||  |||||||     u
cuau  acgu      ggaau uuc guucuGGGAUA   GUUAUAACG  GAUgagg     g
    -a    cuaauc     -   a           UUC         -U       uauuu

Annotation confidence Not enough data

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Genome context

chr5: 13296307-13296422 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from dre-mir-454b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dre-miR-454b

Accession	MIMAT0001878
Description	Danio rerio dre-miR-454b mature miRNA
Sequence	66 - UAGUGCAAUAUUGCUUAUAGGG - 87
Evidence	experimental cloned [1]
Database links
Predicted targets

References

PubMed ID: 15937218
The developmental miRNA profiles of zebrafish as determined by small RNA cloning
"Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
"Genes Dev (2005) 19:1288-1293