Stem-loop sequence dre-mir-454b

AccessionMI0002076
DescriptionDanio rerio miR-454b stem-loop
Gene family MIPF0000174; mir-454
Stem-loop
       aa    ------     c  g           ---         cu       ucuca 
5' gaua  ugca      ucuug ag cgagacccuau   caauauugc  cugcuuu     c
   ||||  ||||      ||||| || |||||||||||   |||||||||  |||||||     u
3' cuau  acgu      ggaau uc guucugggaua   guuauaacg  gaugagg     g
       -a    cuaauc     u  a           uuc         -u       uauuu 
Get sequence
Deep sequencing
13530 reads, 1.44e+03 reads per million, 4 experiments
Confidence
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Genome context
Coordinates (Zv9) Overlapping transcripts
5: 14498653-14498768 [+]
intergenic
Clustered miRNAs
< 10kb from dre-mir-454b
dre-mir-130c-25: 14491174-14491254 [+]
dre-mir-301b5: 14491699-14491779 [+]
dre-mir-454b5: 14498653-14498768 [+]
dre-mir-130b5: 14501677-14501760 [+]
Database links

Mature sequence dre-miR-454b

Accession MIMAT0001878
Sequence

66 - 

uagugcaauauugcuuauaggg

 - 87

Get sequence
Deep sequencing11568 reads, 4 experiments
Evidence experimental; cloned [1]

References

1
PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).