Stem-loop sequence dre-mir-455-1

AccessionMI0002077
Previous IDsdre-mir-455a
DescriptionDanio rerio miR-455-1 stem-loop
Gene family MIPF0000129; mir-455
Stem-loop
   ---ucc  -   -g     -----          u      a   c   gaa 
5'       cu ggu  ugagg     guaugugccc uggacu cau gug   g
         || |||  |||||     |||||||||| |||||| ||| |||    
3'       ga ccg  acucc     cauauacggg accuga gua cac   c
   cuucua  u   ga     guuca          u      c   c   gac 
Get sequence
Deep sequencing
970 reads, 347 reads per million, 4 experiments
Confidence Annotation confidence: high
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Comments

The mir-455 precursor was predicted computationally and a mature product verified in human by Northern blot [2]. The precise sequence termini of the mature form were derived by cloning from human and rat samples (Landgraf and Tuschl, unpublished).

Genome context
Coordinates (Zv9) Overlapping transcripts
5: 67759741-67759836 [-]
sense
OTTDART00000023198 ; si:ch211-233f10.5-001; intron 3
ENSDART00000137363 ; col27a1b-001; intron 3
ENSDART00000097297 ; col27a1b-201; intron 8
Database links

Mature sequence dre-miR-455-5p

Accession MIMAT0001879
Previous IDsdre-miR-455a
Sequence

16 - 

uaugugcccuuggacuacaucg

 - 37

Get sequence
Deep sequencing202 reads, 4 experiments
Evidence by similarity; MI0003513

Mature sequence dre-miR-455-3p

Accession MIMAT0031993
Sequence

52 - 

augcaguccaugggcauauacac

 - 74

Get sequence
Deep sequencing1505 reads, 4 experiments
Evidence not experimental

References

1
PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).
2
PMID:15652478 "Phylogenetic shadowing and computational identification of human microRNA genes" Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E Cell. 120:21-24(2005).