Stem-loop sequence dre-mir-455-1

Previous IDsdre-mir-455a
DescriptionDanio rerio miR-455-1 stem-loop
Gene family MIPF0000129; mir-455
   ---ucc  -   -g     -----          u      a   c   gaa 
5'       cu ggu  ugagg     guaugugccc uggacu cau gug   g
         || |||  |||||     |||||||||| |||||| ||| |||    
3'       ga ccg  acucc     cauauacggg accuga gua cac   c
   cuucua  u   ga     guuca          u      c   c   gac 
Get sequence
Deep sequencing
970 reads, 347 reads per million, 4 experiments
Confidence Annotation confidence: high
Feedback: Do you believe this miRNA is real?

The mir-455 precursor was predicted computationally and a mature product verified in human by Northern blot [2]. The precise sequence termini of the mature form were derived by cloning from human and rat samples (Landgraf and Tuschl, unpublished).

Genome context
Coordinates (Zv9) Overlapping transcripts
5: 67759741-67759836 [-]
OTTDART00000023198 ; si:ch211-233f10.5-001; intron 3
ENSDART00000137363 ; col27a1b-001; intron 3
ENSDART00000097297 ; col27a1b-201; intron 8
Database links

Mature sequence dre-miR-455-5p

Accession MIMAT0001879
Previous IDsdre-miR-455a

16 - 


 - 37

Get sequence
Deep sequencing202 reads, 4 experiments
Evidence by similarity; MI0003513

Mature sequence dre-miR-455-3p

Accession MIMAT0031993

52 - 


 - 74

Get sequence
Deep sequencing1505 reads, 4 experiments
Evidence not experimental


PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).
PMID:15652478 "Phylogenetic shadowing and computational identification of human microRNA genes" Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E Cell. 120:21-24(2005).