Stem-loop dre-mir-458

Accession

MI0002179

Description

Danio rerio dre-mir-458 precursor miRNA

Gene family

MIPF0000179; mir-458

Literature search

1 open access papers mention dre-mir-458
(2 sentences)

Sequence

3062 reads, 322 reads per million, 10 experiments

gugcagauagcAGCGCCAUUUACAGAGCUAUAAgcaucauaguugucAUAGCUCUUUGAAUGGUACUGCcauaugcac
(((((.((.((((.((((((((.((((((((..(((.......))).)))))))).)))))))).)))).)).)))))

Structure

     g  a    C        C        AA   uc 
gugca au gcAG GCCAUUUA AGAGCUAU  gca  a
||||| || |||| |||||||| ||||||||  |||  u
cacgu ua CGUC UGGUAAGU UCUCGAUA  ugu  a
     a  c    A        U        -c   ug 

Annotation confidence High

Genome context

chr14: 25159129-25159206 [-]

Mature dre-miR-458-3p

• Accession: MIMAT0001885
• Description: Danio rerio dre-miR-458-3p mature miRNA
• Sequence: 48 - AUAGCUCUUUGAAUGGUACUGC - 69
• Evidence: experimental ; cloned [1]

Mature dre-miR-458-5p

• Accession: MIMAT0032005
• Description: Danio rerio dre-miR-458-5p mature miRNA
• Sequence: 12 - AGCGCCAUUUACAGAGCUAUAA - 33
• Evidence: not_experimental

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293