Stem-loop sequence dre-mir-458

Accession

MI0002179 (change log)

Description

Danio rerio miR-458 stem-loop

Gene family

MIPF0000179; mir-458

Literature search

1 open access papers mention dre-mir-458
(2 sentences)

Stem-loop

        g  a    cg       c        --a   au 
5' gugca au gcag  ccauuua agagcuau   agc  c
   ||||| || ||||  ||||||| ||||||||   |||   
3' cacgu ua cguc  gguaagu ucucgaua   uug  a
        a  c    au       u        cug   au 

Deep sequencing

4809 reads, 210 reads per million, 10 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr14: 25159129-25159206 [-]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:mir458
• EntrezGene:mir458
• RNAcentral:URS00006BBB07_7955
• miRBase Tracker:MI0002179

Mature sequence dre-miR-458-5p

• Accession: MIMAT0032005
• Sequence: 12 - agcgccauuuacagagcuauaa - 33
• Deep sequencing: 83 reads, 5 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS00007620A2_7955

Mature sequence dre-miR-458-3p

• Accession: MIMAT0001885
• Previous IDs: dre-miR-458
• Sequence: 48 - auagcucuuugaaugguacugc - 69
• Deep sequencing: 4726 reads, 9 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS00005E194D_7955
• Predicted targets:
  • TargetScanFish:dre-miR-458

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).