Stem-loop sequence dre-mir-458

Accession

MI0002179 (change log)

Description

Danio rerio miR-458 stem-loop

Gene family

MIPF0000179; mir-458

Stem-loop

        g  a    cg       c        --a   au 
5' gugca au gcag  ccauuua agagcuau   agc  c
   ||||| || ||||  ||||||| ||||||||   |||   
3' cacgu ua cguc  gguaagu ucucgaua   uug  a
        a  c    au       u        cug   au 

Confidence

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Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr14: 25159129-25159206 [-]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:mir458
• EntrezGene:mir458
• RNAcentral:URS00006BBB07_7955
• miRBase Tracker:MI0002179

Mature sequence dre-miR-458-5p

• Accession: MIMAT0032005
• Sequence: 12 - agcgccauuuacagagcuauaa - 33
• Evidence: not experimental
• Database links:
  • RNAcentral:URS00007620A2_7955

Mature sequence dre-miR-458-3p

• Accession: MIMAT0001885
• Previous IDs: dre-miR-458
• Sequence: 48 - auagcucuuugaaugguacugc - 69
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS00005E194D_7955
• Predicted targets:
  • TargetScanFish:dre-miR-458

References

1. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).