Stem-loop ptc-MIR156a

Accession

MI0002184

Description

Populus trichocarpa ptc-MIR156a precursor miRNA

Gene family

MIPF0000008; MIR156

Literature search

8 open access papers mention ptc-MIR156a
(85 sentences)

Sequence

aaagaaagacUGACAGAAGAGAGUGAGCACacacgaaaguauaugguaugaaggcauuccauugcagggugugugcucacaucucuucugucagcuuccac
...(.(((.(((((((((((((((((((((((((....(((.((((.(((....))).)))))))...)))))))))))).)))))))))))))))).)..

Structure

aaa a   a             -            gaaa   u    u   a 
   g aag cUGACAGAAGAGA GUGAGCACacac    gua augg aug a
   | ||| ||||||||||||| ||||||||||||    ||| |||| |||  
   c uuc gacugucuucucu cacucgugugug    cgu uacc uac g
-ca c   -             a            -gga   -    u   g 

Annotation confidence Not enough data

Genome context

CM000342.2: 19089414-19089514 [-]

Mature ptc-miR156a

• Accession: MIMAT0001890
• Description: Populus trichocarpa ptc-miR156a mature miRNA
• Sequence: 11 - UGACAGAAGAGAGUGAGCAC - 30
• Evidence: not_experimental

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604