Stem-loop ptc-MIR156b

Accession

MI0002185

Description

Populus trichocarpa ptc-MIR156b precursor miRNA

Gene family

MIPF0000008; MIR156

Literature search

8 open access papers mention ptc-MIR156b
(78 sentences)

Sequence

guaagggaggUGACAGAAGAGAGUGAGCACacaggguacuuucuugcaugacauccaugcuugaaacuuugcgugcucacucucuaucugucaccccacca
.....((.((((((((((((((((((((((.((((((...(((..(((((.....)))))..))))))))).))))))))))))).)))))))))))....

Structure

guaag  a         -             a      acu   uu     a 
     gg ggUGACAGA AGAGAGUGAGCAC cagggu   uuc  gcaug c
     || ||||||||| ||||||||||||| ||||||   |||  ||||| a
     cc ccacugucu ucucucacucgug guuuca   aag  cguac u
-acca  -         a             c      ---   uu     c 

Annotation confidence Not enough data

Genome context

CM000342.2: 22869899-22869999 [-]

Mature ptc-miR156b

• Accession: MIMAT0001891
• Description: Populus trichocarpa ptc-miR156b mature miRNA
• Sequence: 11 - UGACAGAAGAGAGUGAGCAC - 30
• Evidence: not_experimental

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604