miRBase entry: ptc-MIR156e

Stem-loop ptc-MIR156e


Accession
MI0002188
Description
Populus trichocarpa ptc-MIR156e precursor miRNA
Gene family
MIPF0000008; MIR156

Literature search
8 open access papers mention ptc-MIR156e
(77 sentences)

Sequence

cauuagaaacUGACAGAAGAGAGUGAGCACacagaggcauauuuguauaaaucuauaccauugcuuuugcgugcucacuucucauucugucagcuuccaga
.....(((.(((((((((((((((((((((.((((((((.....(((((....)))))...)))))))).)))))))).)))).))))))))).)))....

Structure
cauua   a         -    -        a        uauuu     a 
     gaa cUGACAGAA GAGA GUGAGCAC cagaggca     guaua a
     ||| ||||||||| |||| |||||||| ||||||||     |||||  
     cuu gacugucuu cucu cacucgug guuuucgu     cauau u
-agac   c         a    u        c        --uac     c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ptc-miR156e

Accession MIMAT0001894
Description Populus trichocarpa ptc-miR156e mature miRNA
Sequence 11 - UGACAGAAGAGAGUGAGCAC - 30
Evidence not_experimental

References

  1. PubMed ID: 16973872
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
    "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
    "Science (2006) 313:1596-1604

  2. PubMed ID: 15994906
    Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
    "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
    "Plant Cell (2005) 17:2186-2203