Stem-loop ptc-MIR159a

Accession

MI0002195

Description

Populus trichocarpa ptc-MIR159a precursor miRNA

Gene family

MIPF0000010; MIR159

Literature search

9 open access papers mention ptc-MIR159a
(75 sentences)

Sequence

gauuagggaguggagcuccuugaaguccaauagagguucuugcuggguagauuaagcugcuaagcuauggauccacaguccuaucuaucaaccgaaggauagguuugcggcuugcauaucucaggagcuuuauugccuaauguuagaucccuuUUUGGAUUGAAGGGAGCUCUAaacccauaa
.....(((..(((((((((((..(((((((.(((((.(((.(((((((((...(((((.((.((.((((.(.((.(((.(((((((.((....)).))))))).))).))..).)))).)).)).)))))..)))))))..)).)))..))))))))))))..)))))))))))..)))....

Structure

gauua   ag           ga       u     -u   u  --       auu     g  a  c    g -u  a   u       a  a 
     ggg  uggagcuccuu  aguccaa agagg  ucu gc  uggguag   aagcu cu ag uaug a  cc cag ccuaucu uc a
     |||  |||||||||||  ||||||| |||||  ||| ||  |||||||   ||||| || || |||| |  || ||| ||||||| ||  
     ccc  AUCUCGAGGGA  UUAGGUU Uuucc  aga ug  auccguu   uucga ga uc auac u  gg guu ggauagg ag c
-aaua   aa           AG       -     cu   u  ua       -au     g  c  u    g uc  c   u       a  c 

Annotation confidence Not enough data

Genome context

CM000348.2: 4086335-4086517 [-]

Mature ptc-miR159a

• Accession: MIMAT0001901
• Description: Populus trichocarpa ptc-miR159a mature miRNA
• Sequence: 154 - UUUGGAUUGAAGGGAGCUCUA - 174
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604


2. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203