miRBase entry: ptc-MIR159b

Stem-loop ptc-MIR159b


Accession
MI0002196
Description
Populus trichocarpa ptc-MIR159b precursor miRNA
Gene family
MIPF0000010; MIR159

Literature search
9 open access papers mention ptc-MIR159b
(49 sentences)

Sequence

gauuauggaguggagcuccuugaaguccaauagaagcuccugcuggguagaucgagcugcugagcuaugaaucccacagcccuaucaccaucagucauuuugaugggccugcggcuugcauaucucaggagcuuuauuaccuaauguuagaucuuuuUUUGGAUUGAAGGGAGCUCUAaaccuuuga
......((..(((((((((((..(((((((.(((((.((..(((((((((...(((((.(((((.((((....((.(((.(((((((.............))))))).))).))....)))).))))).)))))..)))))))..))..)).))))).)))))))..)))))))))))..)).....

Structure
gauuau  ag           ga       u     c  cu  --       auc     g     c    aauc  a   c       ccauc 
      gg  uggagcuccuu  aguccaa agaag uc  gc  uggguag   gagcu cugag uaug    cc cag ccuauca     a
      ||  |||||||||||  ||||||| ||||| ||  ||  |||||||   ||||| ||||| ||||    || ||| |||||||     g
      cc  AUCUCGAGGGA  UUAGGUU uuuuc ag  ug  auccauu   uucga gacuc auac    gg guc ggguagu     u
-aguuu  aa           AG       U     u  au  ua       -au     g     u    guuc  c   c       uuuac 


Annotation confidence Not enough data
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Genome context
CM000351.2: 4261680-4261866 [+]

Database links

Mature ptc-miR159b

Accession MIMAT0001902
Description Populus trichocarpa ptc-miR159b mature miRNA
Sequence 158 - UUUGGAUUGAAGGGAGCUCUA - 178
Evidence experimental
cloned [1]

References

  1. PubMed ID: 16973872
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
    "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
    "Science (2006) 313:1596-1604

  2. PubMed ID: 15994906
    Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
    "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
    "Plant Cell (2005) 17:2186-2203