Stem-loop ptc-MIR159d

Accession

MI0002198

Description

Populus trichocarpa ptc-MIR159d precursor miRNA

Gene family

MIPF0000010; MIR159

Literature search

9 open access papers mention ptc-MIR159d
(47 sentences)

Sequence

uuguaaauuugggagcuuucuuugguucaaaaugaggaaagaaaguggguauacucgucugcuuguucauggauaccucuggguugcgcaggauauauuaguuagggcuacagcuuaaggguuugcauggccaaggagacguugccugccuucuccuuucguuuCUUGGAUUGAAGGGAGCUCCUacauguauc
.........((((((((((((((((((((((((((((..((((.(((((((....(((((.((((.(((((.(.((((.(((((((.((..(((......)))...))..))))))).)))).).))))).)))).))))).))))))).))))..)))))))..)))))))))))))))))))))........

Structure

uuguaaauu                     --       aa    a       uacu     g    u     g u    c       -c  -ag   au 
         ugggagcuuucuuugguucaa  aaugagg  agaa gugggua    cgucu cuug ucaug a accu uggguug  gc   gau  a
         |||||||||||||||||||||  |||||||  |||| |||||||    ||||| |||| ||||| | |||| |||||||  ||   |||   
         aUCCUCGAGGGAAGUUAGGUU  uugcuuu  ucuu cguccgu    gcaga gaac gguac u uggg auucgac  cg   uug  u
-cuauguac                     Cu       cc    c       ---u     g    c     g u    a       au  gga   au 

Annotation confidence Not enough data

Genome context

CM000350.2: 6603532-6603725 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ptc-MIR159d

Mature ptc-miR159d

• Accession: MIMAT0001904
• Description: Populus trichocarpa ptc-miR159d mature miRNA
• Sequence: 165 - CUUGGAUUGAAGGGAGCUCCU - 185
• Evidence: not_experimental

References

1. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604