Stem-loop ptc-MIR160b

Accession

MI0002202

Description

Populus trichocarpa ptc-MIR160b precursor miRNA

Gene family

MIPF0000032; MIR160

Literature search

6 open access papers mention ptc-MIR160b
(22 sentences)

Sequence

auauuauaugUGCCUGGCUCCCUGUAUGCCAuuugcagagcccaacggauccucgauggccuccguggaugGCGUAUGAGGAGCCAUGCAUAuucgca
.......((((((.(((((((.((((((((((((((.(((.(((.(((....))).))).))).)))))))))))))).))))))).)))))).....

Structure

auauuau      C       C              a   c   a   a 
       augUGC UGGCUCC UGUAUGCCAuuugc gag cca cgg u
       |||||| ||||||| |||||||||||||| ||| ||| |||  
       uAUACG ACCGAGG GUAUGCGguaggug cuc ggu gcu c
--acgcu      U       A              c   c   a   c 

Annotation confidence Not enough data

Genome context

CM000344.2: 2253371-2253468 [-]

Mature ptc-miR160b-5p

• Accession: MIMAT0001908
• Description: Populus trichocarpa ptc-miR160b-5p mature miRNA
• Sequence: 11 - UGCCUGGCUCCCUGUAUGCCA - 31
• Evidence: experimental ; cloned [1], miRNAseq [4]

Mature ptc-miR160b-3p

• Accession: MIMAT0022890
• Description: Populus trichocarpa ptc-miR160b-3p mature miRNA
• Sequence: 72 - GCGUAUGAGGAGCCAUGCAUA - 92
• Evidence: experimental ; miRNAseq [4]

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 16973872
   The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
   "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
   "Science (2006) 313:1596-1604


3. PubMed ID: 15994906
   Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
   "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
   "Plant Cell (2005) 17:2186-2203


4. PubMed ID: 22442676
   Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets
   Puzey JR, Karger A, Axtell M, Kramer EM
   PLoS One (2012) 7:e33034