miRBase entry: ptc-MIR160h

Stem-loop ptc-MIR160h


Accession
MI0002208
Description
Populus trichocarpa ptc-MIR160h precursor miRNA
Gene family
MIPF0000032; MIR160

Literature search
6 open access papers mention ptc-MIR160h
(22 sentences)

Sequence

gaucccugugUGCCUGGCUCCCUGCAUGCCAuuugcauagcucaucagaacgucgguggccuugguggauggcgugcaacgagucaugcaugcuguga
.......((((((.((((((..((((((((((((((..((.(((((........))))).))..))))))))))))))..)))))).)))))).....

Structure
gaucccu      C      CC              au  c     aga 
       gugUGC UGGCUC  UGCAUGCCAuuugc  ag ucauc   a
       |||||| ||||||  ||||||||||||||  || |||||    
       cguacg acugag  acgugcgguaggug  uc ggugg   c
--agugu      u      ca              gu  c     cug 


Annotation confidence Not enough data
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Genome context
CM000352.2: 6921900-6921997 [-]

Database links

Mature ptc-miR160h

Accession MIMAT0001914
Description Populus trichocarpa ptc-miR160h mature miRNA
Sequence 11 - UGCCUGGCUCCCUGCAUGCCA - 31
Evidence not_experimental

References

  1. PubMed ID: 16973872
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
    "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
    "Science (2006) 313:1596-1604

  2. PubMed ID: 15994906
    Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis
    "Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL"
    "Plant Cell (2005) 17:2186-2203